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JOURNAL OF MARINE SYSTEMS

Guide for Authors

General
It is essential to provide a fax number and e-mail address when submitting a manuscript. Articles must be written in good English.
Submission of an article is understood to imply that the article has not been published previously (except in the form of an abstract or as part of a published lecture or academic thesis), that it is not under consideration for publication elsewhere, that its publication is approved by all Authors and tacitly or explicitly by the responsible authorities where the work was carried out, and that, if accepted, it will not be published elsewhere in the same form, in English or in any other language, without the written consent of the Publisher.


Submission of papers
Submission to the Journal of Marine Systems proceeds totally online at External link http://ees.elsevier.com/marsys. When submitting a manuscript to Elsevier Editorial System, authors need to provide an electronic version of their manuscript. For this purpose original source files, not PDF files, are preferred. The author should specify a category designation for the manuscript (full length article, review article, short communication, etc.) and choose a set of classifications from the prescribed list provided online. Authors may send queries concerning the submission process to the Author Support Department. Once the submission files are uploaded, the system automatically generates an electronic (PDF) manuscript, which is then used for the review process. All correspondence, including the Editor's decision and request for revisions, takes place by email.

Copyright
Upon acceptance of an article, authors will be asked to sign a 'Journal Publishing Agreement' (for more information on this and copyright see External link http://www.elsevier.com/copyright). Acceptance of the agreement will ensure the widest possible dissemination of information. An e-mail (or letter) will be sent to the corresponding author confirming receipt of the manuscript together with a 'Journal Publishing Agreement' form or a link to the online version of this agreement.
Subscribers may reproduce tables of contents or prepare lists of articles including abstracts for internal circulation within their institutions. Permission of the Publisher is required for resale or distribution outside the institution and for all other derivative works, including compilations and translations (please consult External link http://www.elsevier.com/permissions).
If excerpts from other copyrighted works are included, the author(s) must obtain written permission from the copyright owners and credit the source(s) in the article. Elsevier has preprinted forms for use by authors in these cases: please consult External link http://www.elsevier.com/permissions.

Funding body agreements and policies

Elsevier has established agreements and developed policies to allow authors who publish in Elsevier journals to comply with potential manuscript archiving requirements as specified as conditions of their grant awards. To learn more about existing agreements and policies please visit External link http://www.elsevier.com/fundingbodies

Preparation of Texts
We accept most word processing formats for accepted articles, but Word, WordPerfect or LaTeX is preferred. The text should be single column and double spaced. Keep the layout as simple as possible. Do not import the figures into the text file, but, instead, indicate their approximate locations directly in the electronic text.

If the LaTeX file is suitable, proofs will be produced without rekeying the text. The article should preferably be written using Elsevier's document class "elsart", or alternatively the standard document class "article", The Elsevier LaTeX package (including detailed instructions for LaTeX preparation) can be obtained from: External link http://www.elsevier.com/latex. It consists of the files: elsart.cls, guidelines for users of elsart, a template file for quick start and the instruction booklet "Preparing articles with LaTeX. Please also upload either a pdf or postscript file of the article.

Presentation of Manuscript
General
Please write your text in good English (American or British usage is accepted, but not a mixture of these). Authors whose native language is not English are recommended to seek the advice of a colleague who has English as their mother tongue.
Language Polishing
Authors who require information about language editing and copyediting services pre- and post-submission please visit External link http://www.elsevier.com/wps/find/authorshome.authors/languagepolishing or contact authorsupport@elsevier.com for more information. Please note Elsevier neither endorses nor takes responsibility for any products, goods or services offered by outside vendors through our services or in any advertising. For more information please refer to our Terms & Conditions External link http://www.elsevier.com/wps/find/termsconditions.cws_home/termsconditions.

Provide the following data on the title page (in the order given)
Title
Concise and informative. Titles are often used in information-retrieval systems. Avoid abbreviations and formulae where possible.
Author names and affiliations
Where the family name may be ambiguous (e.g., a double name), please indicate this clearly. Present the authors' affiliation addresses (where the actual work was done) below the names. Indicate all affiliations with a lower-case superscript letter immediately after the author's name and in front of the appropriate address. Provide the full postal address of each affiliation, including the country name, and, if available, the e-mail address of each author. Corresponding author
Clearly indicate who is willing to handle correspondence at all stages of refereeing and publication, also post-publication. Ensure that telephone and fax numbers (with country and area code) are provided in addition to the e-mail address and the complete postal address.
Present/permanent address
If an author has moved since the work described in the article was done, or was visiting at the time, a 'Present address' (or 'Permanent address') may be indicated as a footnote to that author's name. The address at which the author actually did the work must be retained as the main, affiliation address. Superscript Arabic numerals are used for such footnotes.

Abstract
A concise and factual abstract is required (maximum length 500 words.) The abstract should state briefly the purpose of the research, the methods used, the principal results and the main results. An abstract is often presented separate from the article, so it must be able to stand alone.


Keywords
Immediately after the abstract, provide up to six keywords, plus regional index terms. At least four of the subject keywords should be selected from the Aquatic Science & Fisheries Thesaurus. An electronic version of the Thesaurus can be found at External link http://www4.fao.org/asfa/asfa.htm. You may find a paper version in your library. The Regional Terms should be provided as a hierarchical string (eg: USA, California, Monterey Bay). Authors are also encouraged to submit geographic bounding coordinates at the end of the keyword string. These keywords will be used for indexing purposes.


Body of the article
Divide your article into clearly defined and numbered sections. Subsections should be numbered 1.1 (then 1.1.1, 1.1.2), 1.2, etc. (the abstract is not included in section numbering). Also use this numbering for internal cross-referencing; do not just refer to 'the text'. Any subsection may be given a brief heading. Each heading should appear on its own separate line.
In the Introduction, state the objectives of the work, and provide an adequate background, avoiding a detailed literature survey or a summary of the results.
Results should be clear and concise. The Discussion should explore the significance of the results of the work, not repeat them. A combined Results and Discussion section is often appropriate. Avoid extensive citations and discussion of published literature.
A short Conclusions section is to be presented. Place Acknowledgements, including information on grants received, before the references in a separate section, and not as a footnote on the title page.
Figure captions, tables, figures and schemes should be presented in this order at the end of the article. They are described in more detail below.


Footnotes
Footnotes should be used sparingly. Number them consecutively throughout the article, using superscript Arabic numbers. Many word processors build footnotes into the text, and this feature may be used. Should this not be the case, indicate the position of footnotes in the text and present the footnotes themselves on a separate sheet at the end of the article. Do not include footnotes in the Reference list. Indicate each table footnote in a table with a superscript lowercase letter.


Tables
Number tables consecutively in accordance with their appearance in the text. Place footnotes to tables below the table body and indicate them with superscript lowercase letters. Avoid vertical rules. Be sparing in the use of tables and ensure that the data presented in tables do not duplicate results described elsewhere in the article.


Formulae
Present simple formulae in the line of normal text where possible. In principle, variables are to be presented in italics. Use the solidus (/) instead of a horizontal line, e.g.,

X/Y rather than

X
Y

Powers of e are often more conveniently denoted by exp.
Number consecutively any equations that have to be displayed separate from the text (if referred to explicitly in the text).

References
Responsibility for the accuracy of bibliographic citations lies entirely with the Author(s).
Please ensure that every reference cited in the text is also present in the reference list (and vice versa). Any references cited in the abstract must be given in full. Unpublished results and personal communications are not recommended in the reference list, but may be mentioned in the text. If these references are included in the reference list, they should follow the standard reference style of the journal, and should include a substitution of the publication date with either "Unpublished results" or "Personal communication". Citation of a reference as 'in press' implies that the item has been accepted for publication and a copy of the title page of the relevant article must be submitted.
The Journal of Marine Systems uses a name and year system in its reference lists. .
All citations in the text should refer to:
1. Single Author: the author's name (without initials unless there is ambiguity) and year of publication.
2. Two Authors: both authors names and the year of publication.
3. Three or more Authors; first Author's name followed by "et al." and the year of publication.
In the Reference list, the references should be arranged first alphabetically and then further sorted chronologically if necessary. More than one reference from the same author(s) in the same year must be identified by the letters "a", "b", "c", etc., placed after the year of publication.
The names of authors and all co-authors must be given in full.
Examples:
References to a journal publication:
Names and initials of all authors, year. Title of paper. Journal name (given in full or abbreviated using the International List of Periodical Title Word Abbreviations), volume number (issue number): first and last page numbers of the paper.
Wassmann, P., Slagstad, D., Riser, C.W., Reigstad, M. 2006. Modelling the ecosystem dynamics of the Barents Sea including the marginal ice zone: II. Carbon flux and interannual variability. J. Mar. Syst. 59 (1-2), 1-24.

References to a book:
Names and initials of all authors, year. Title of the book. Publisher, location of publisher.
Fennel, W. and Neumann, T., 2004. Introduction to the modelling of marine ecosystems, Elsevier Oceanographic Series 72, Elsevier, Amsterdam. 297 pp.


Reference to a chapter in an edited book:
Names and initials of all authors, year. Title of paper. Names and initials of the volume editors, title of the edited volume. Publisher, location of publisher, first and last page numbers of the paper.
Thomas, E., 1992. Middle Eocene-late Oligocene bathyal benthic foraminifera (Weddell Sea): faunal changes and implications for ocean circulation. In: Prothero, D.R., Berggren, W.A. (Eds.), Eocene Oligo-cene Climatic and Biotic Evolution. Princeton Univ. Press, Princeton, NJ, pp. 245-271.


Conference proceedings papers:
Names and initials of all authors, year. Title of paper. Name of the conference. Publisher, location of publisher, first and last page numbers of the paper.
Smith, M.W., 1988. The significance of climatic change for the permafrost environment. Final Proc. Int. Conf. Permafrost. Tapir, Trondheim, Norway, pp. 18-23.


Theses, reports, etc.:
Names and initials of all authors, year. Title of item. All other relevant information needed to identify the item (e.g., technical report, Ph.D. thesis, institute, current status i.e. published in press/unpublished etc.).
Burchard, H..1995. Turbulenzmodellierung mit Anwendungen auf thermische Deckschichten im Meer und Strömungen in Wattengebieten. PhD thesis, University of Hamburg, GKSS Research Centre, GKSS 95/E/30, 299 pp.

In the case of publications in any language other than English, the original title is to be retained. Titles of publications in non-Latin alphabets should be transliterated, and a note such as '(in Russian)' or '(in Japanese, with English Abstr.)' should be added at the end of the reference.


The following provide examples of appropriate citation formats for non-text and electronic-only information. However, it is requested that a Web site address, or list server message is given as a reference only where the information is unavailable in a more permanent form. If such sources are given, then please give as complete information as possible.
Jones, P., 1996. Research activities at Smith Technology Institute. WWW Page, http://www.sti.com/about_us/research.
Smith, F., Peabody, A.N., 1997. Hydrographic data for the Sargasso Sea, July-September 1993, SarSea mission. (Deep-Sea Data Centre, Hull, UK), online, dataset, 740 MB, http://www.dcdc.gov.
Green, A., 1991. Deformations in Acanthaster planci from the Coral Sea, observed during UEA Special Project 7, July 1978. Journal of Pollution Research 14 (7) suppl., CD-ROM, photographic images, 240 MB.
James, Z., 1997. Ecological effects of sea wall construction during 1994 at Bridlington, UK. List server Message, Eco-list, 20 October 1995.


Use of the Digital Object Identifier
The digital object identifier (DOI) may be used to cite and link to electronic documents. The DOI consists of a unique alpha-numeric character string which is assigned to a document by the publisher upon the initial electronic publication. The assigned DOI never changes. Therefore, it is an ideal medium for citing a document, particularly "Articles in press" because they have not yet received their full bibliographic information. The correct format for citing a DOI is shown as follows. 1016/j.jmarsys.200X.XX.XXX.
When you use the DOI to create URL hyperlinks to documents on the web, they are guaranteed never to change.

Preparation of Electronic Illustrations
General points
  • Upload source files and not .pdf files
  • Use uniform lettering and sizing for of your original artwork.
  • Save text in illustrations as "graphics" or enclose the font.
  • Use the following fonts in your illustrations: Arial, Courier, Helvetica, Times, Symbol.
  • Number the illustrations according to their sequence in the text.
  • Use a logical naming convention for your artwork files.
  • Provide all illustrations as separate files.
  • Ensure each illustration has a caption. Supply the captions separately.
  • Produce images near to the desired size of the printed version.


A detailed guide on electronic artwork is available on our website: External link http://www.elsevier.com/artworkinstructions
You are urged to visit this site; some excerpts from the detailed information are given here.

Formats
Regardless of the application used, when your electronic artwork is finalised, please "save as" or convert the images to one of the following formats (Note the resolution requirements for line drawings, halftones, and line/halftone combinations given below.):
EPS: Vector drawings. Embed the font or save the text as "graphics".
TIFF: Colour or greyscale photographs (halftones): always use a minimum of 300 dpi.
TIFF: Bitmapped line drawings: use a minimum of 1000 dpi.
TIFF: Combinations bitmapped line/half-tone (colour or greyscale): a minimum of 500 dpi is required.
DOC, XLS or PPT: If your electronic artwork is created in any of these Microsoft Office applications please supply "as is".
Please do not:
Supply embedded graphics in your wordprocessor (spreadsheet, presentation) document when submitting the final accepted article;
Supply files that are optimised for screen use (like GIF, BMP, PICT, WPG); the resolution is too low;
Supply files that are too low in resolution;
Submit graphics that are disproportionately large for the content.

Colour illustrations If, together with your accepted article, you submit usable colour figures then Elsevier will ensure, at no additional charge, that these figures will appear in colour on the web (e.g., ScienceDirect and other sites) regardless of whether or not these illustrations are reproduced in colour in the printed version. For colour reproduction in print, you will receive information regarding the costs from Elsevier after receipt of your accepted article. For further information on the preparation of electronic artwork, please see External link http://www.elsevier.com/artworkinstructions. Please note: Because of technical complications which can arise by converting colour figures to 'grey scale' (for the printed version should you not opt for colour in print) please submit in addition usable black and white files corresponding to all the colour illustrations.

Supplementary data
Preparation of supplementary data. Elsevier accepts electronic supplementary material to support and enhance your scientific research. Supplementary files offer the author additional possibilities to publish supporting applications, movies, animation sequences, high-resolution images, background datasets, sound clips and more. Supplementary files supplied will be published online alongside the electronic version of your article in Elsevier Web products, including ScienceDirect: External link http://www.sciencedirect.com. In order to ensure that your submitted material is directly usable, please ensure that data is provided in one of our recommended file formats. Authors should submit the material in electronic format together with the article and supply a concise and descriptive caption for each file. For more detailed instructions please visit our artwork instruction pages at External link http://www.elsevier.com/artworkinstructions.

Page Proofs

Proofs are not to be regarded as 'drafts'.
One set of page proofs in PDF format will be sent by e-mail to the corresponding author (if we do not have an e-mail address then paper proofs will be sent by post). Elsevier now sends PDF proofs which can be annotated; for this you will need to download Adobe Reader version 7 available free from External link http://www.adobe.com/products/acrobat/readstep2.html. Instructions on how to annotate PDF files will accompany the proofs. The exact system requirements are given at the Adobe site: External link http://www.adobe.com/products/acrobat/acrrsystemreqs.html#70win. If you do not wish to use the PDF annotations function, you may list the corrections (including replies to the Query Form) and return to Elsevier in an e-mail. Please list your corrections quoting line number. If, for any reason, this is not possible, then mark the corrections and any other comments (including replies to the Query Form) on a printout of your proof and return by fax, or scan the pages and e-mail, or by post.
Please use this proof only for checking the typesetting, editing, completeness and correctness of the text, tables and figures. Significant changes to the article as accepted for publication will only be considered at this stage with permission from the Editor. We will do everything possible to get your article published quickly and accurately. Therefore, it is important to ensure that all of your corrections are sent back to us in one communication: please check carefully before replying, as inclusion of any subsequent corrections cannot be guaranteed. Proofreading is solely your responsibility. Note that Elsevier may proceed with the publication of your article if no response is received.

Online Publication
Your article will appear on Elsevier's online journal database ScienceDirect as an "Article in Press" within approximately 4-6 weeks of acceptance. Articles in Press for this journal can be viewed at External link http://www.sciencedirect.com/science/journal/09247963. An Article in Press may be cited prior to its publication by means of its unique digital object identifier (DOI) number, which does not change throughout the publication process.

Reprints
The corresponding author, at no cost, will be provided with a PDF file of the article via e-mail or, alternatively, 25 free paper offprints. The PDF file is a watermarked version of the published article and includes a cover sheet with the journal cover image and a disclaimer outlining the terms and conditions of use. Additional reprints can be ordered on a reprint order form which will be sent to the corresponding author of the accepted article by the publisher.

Author Discount
Contributors to Elsevier journals are entitled to a 30% discount on most Elsevier books, if ordered directly from Elsevier

Contact
You can track accepted articles at External link http://www.elsevier.com/trackarticle and set up e-mail alerts to inform you of when an article's status has changed, as well as copyright information, frequently asked questions and more.
Contact details for questions arising after acceptance of an article (especially those relating to proofs) are provided after registration of an article for publication.

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