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Conceptual Background and Bioenergetic/Mitochondrial Aspects of Oncometabolism - 1st Edition - ISBN: 9780124166189, 9780124166578

Conceptual Background and Bioenergetic/Mitochondrial Aspects of Oncometabolism, Volume 542

1st Edition

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Serial Volume Editors: Lorenzo Galluzzi Guido Kroemer
Hardcover ISBN: 9780124166189
eBook ISBN: 9780124166578
Imprint: Academic Press
Published Date: 27th May 2014
Page Count: 536
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Table of Contents

  • Preface
    • Acknowledgments
  • Chapter One: The Metabolic Alterations of Cancer Cells
    • Abstract
    • 1 Introduction
    • 2 Aerobic Glycolysis: A Hallmark of Cancer Cell Metabolism
    • 3 Mitochondrial Metabolism in Cancer Cells
    • 4 Lipid Metabolism in Cancer Cells
    • 5 Future Perspectives: Altered Metabolism Shapes Tumor Evolution
    • 6 Conclusions
  • Chapter Two: Autophagy and Cancer Metabolism
    • Abstract
    • 1 Introduction
    • 2 Overview of the Autophagy Machinery
    • 3 Metabolic Stimuli Regulating Autophagy
    • 4 Autophagy and Tumor Suppression
    • 5 Tumor-Promoting Functions of Autophagy
    • 6 Conclusion
    • Acknowledgments
  • Chapter Three: Regulation of Cancer Metabolism by Oncogenes and Tumor Suppressors
    • Abstract
    • 1 Introduction
    • 2 HIF-1: Regulator of Hypoxic Responses and Cancer Metabolism
    • 3 The PI3K–AKT–PTEN Pathway Regulates Metabolism
    • 4 mTOR Controls Anabolism and It Is Inhibited By AMPK Upon Metabolic Stress
    • 5 c-Myc Promotes Aerobic Anabolism
    • 6 Ras Stimulates Glycolysis and the PPP
    • 7 NF-kappaB Regulates Inflammation and Proliferation But Also Metabolism
    • 8 Retinoblastoma: Suppressing Tumorogenesis and Anabolism
    • 9 p53 Regulates Multiple Metabolic Pathways
    • 10 Conclusions
    • Acknowledgments
  • Chapter Four: Cross Talk Between Cell Death Regulation and Metabolism
    • Abstract
    • 1 Introduction
    • 2 Signaling to Programmed Cell Death
    • 3 Bioenergetic Regulation of Programmed Cell Death
    • 4 Redox Signaling and ROS: Critical Regulators of Programmed Cell Death
    • 5 Destructive ROS During the Execution of Cell Death
    • 6 Conclusions
    • Acknowledgments
  • Chapter Five: Techniques to Monitor Glycolysis
    • Abstract
    • 1 Introduction
    • 2 Measuring Glucose Uptake and Lactate Production
    • 3 Measuring the Activity of Rate-Limiting Glycolytic Enzymes
    • 4 Metabolite Measurements and Glucose Tracing
    • 5 Summary
    • Acknowledgments
  • Chapter Six: Measurement of Enolase Activity in Cell Lysates
    • Abstract
    • 1 Introduction
    • 2 Assay of Enolase Activity
    • 3 DEAE-Cellulose Chromatography
  • Chapter Seven: Extracellular Flux Analysis to Monitor Glycolytic Rates and Mitochondrial Oxygen Consumption
    • Abstract
    • 1 Introduction
    • 2 Techniques to Evaluate Immune Cell Bioenergetics
    • 3 Bioenergetic Profiling of Immune Cells Using the XF Extracellular Flux Analyzer
    • 4 Summary
  • Chapter Eight: Conventional Techniques to Monitor Mitochondrial Oxygen Consumption
    • Abstract
    • 1 Introduction
    • 2 Principles of Cell Respiration Measurements
    • 3 Conventional Measurement of Oxygen Consumption
  • Chapter Nine: Use of Safranin for the Assessment of Mitochondrial Membrane Potential by High-Resolution Respirometry and Fluorometry
    • Abstract
    • 1 Introduction
    • 2 Preparation of Mitochondrial Thom
    • 3 HRR and Determination of mtMP by Safranin
    • 4 Limitations of Safranin as mtMP Indicator
    • 5 Respirometry with Homogenate
    • 6 Optimization of Conditions for Use of Safranin
    • 7 An Application Example
    • 8 Conclusions
  • Chapter Ten: Kinetic Analysis of Local Oxygenation and Respiratory Responses of Mammalian Cells Using Intracellular Oxygen-Sensitive Probes and Time-Resolved Fluorometry
    • Abstract
    • 1 Introduction
    • 2 Experimental Design and Protocols
    • Acknowledgments
  • Chapter Eleven: Cell-Based Measurements of Mitochondrial Function in Human Subjects
    • Abstract
    • 1 Introduction
    • 2 Blood Lymphocyte Protocol
    • 3 Skeletal Muscle Myoblast Protocol
    • 4 Data Analysis
    • Acknowledgments
  • Chapter Twelve: Use of Chemical Probes to Detect Mitochondrial ROS by Flow Cytometry and Spectrofluorometry
    • Abstract
    • 1 Introduction
    • 2 Mitochondrial ROS Production
    • 3 Methods to Detect ROS Production
    • 4 Concluding Remarks
    • Acknowledgments
  • Chapter Thirteen: Methods to Monitor ROS Production by Fluorescence Microscopy and Fluorometry
    • Abstract
    • 1 Introduction
    • 2 Measurement of Reactive Oxygen Species Production in Intact Adherent Cells Using Fluorescent Probes
    • 3 Quantification of Protein Level with the Use of the SRB Assay
    • 4 Measurement of Mitochondrial ROS Production in Permeabilized Cells with the Amplex Red Fluorescent Probe
    • 5 Measurement of ROS by Fluorescence Microscopy
    • Acknowledgments
  • Chapter Fourteen: Genetically Encoded Redox Sensors
    • Abstract
    • 1 Introduction
    • 2 Endogenously Encoded Redox Sensors
    • 3 Engineered Genetically Encoded Redox Sensors
    • 4 Oxidative Stress in Cancer and Potential Applications of Redox Sensors in Oncology Research
    • 5 Limitations and Future of Genetically Encoded Redox Sensors
    • 6 Summary
  • Chapter Fifteen: Use of Genetically Encoded Sensors to Monitor Cytosolic ATP/ADP Ratio in Living Cells
    • Abstract
    • 1 Introduction
    • 2 Experimental Components and Considerations
    • 3 Typical Experiment: [ATP/ADP]cyt in Pancreatic β-Cells
    • 4 Summary
    • Acknowledgments
  • Chapter Sixteen: Methods to Monitor and Compare Mitochondrial and Glycolytic ATP Production
    • Abstract
    • 1 Introduction
    • 2 Monitoring Intracellular ATP Using Luciferase-Based Techniques
    • 3 Monitoring Intracellular ATP Using Alternative Enzymatic Methods
    • 4 Summary
    • Acknowledgments
  • Chapter Seventeen: Measurement of ADP–ATP Exchange in Relation to Mitochondrial Transmembrane Potential and Oxygen Consumption
    • Abstract
    • 1 Introduction
    • 2 Methodology
    • 3 Conclusions and Comments
    • Acknowledgments
  • Chapter Eighteen: Real-Time Assessment of the Metabolic Profile of Living Cells with Genetically Encoded NADH Sensors
    • Abstract
    • 1 Introduction
    • 2 Experimental Components and Considerations
    • 3 Initial Characterization Experiments
    • 4 Steady-State and Kinetics Experiments
    • 5 Data Handling/Processing
    • 6 Summary
    • Acknowledgments
  • Chapter Nineteen: 13C Isotope-Assisted Methods for Quantifying Glutamine Metabolism in Cancer Cells
    • Abstract
    • 1 Introduction
    • 2 Methods
    • 3 Applications
    • 4 Summary
    • Acknowledgments
  • Chapter Twenty: Measurement of Fatty Acid Oxidation Rates in Animal Tissues and Cell Lines
    • Abstract
    • 1 Introduction
    • 2 Protocol Overview
    • 3 Equipment
    • 4 Materials
    • 5 Protocol
    • 6 Data Handling and Calculations
    • Acknowledgments
  • Chapter Twenty-One: Methods to Assess Lipid Accumulation in Cancer Cells
    • Abstract
    • 1 Introduction
    • 2 Materials
    • 3 Methods
    • 4 Notes
    • Acknowledgments
  • Chapter Twenty-Two: Analysis of Hypoxia-Induced Metabolic Reprogramming
    • Abstract
    • 1 Introduction
    • 2 Exposure of Cells to Hypoxic Culture Conditions
    • 3 Alterations in Glucose Uptake and Metabolism
    • 4 Induction of Mitochondria-Selective Autophagy
    • 5 Maintenance of Intracellular pH
    • Acknowledgments
  • Author Index
  • Subject Index

Description

Volume 542 of Methods in Enzymology continues the legacy of this premier serial with quality chapters authored by leaders in the field. This new volume covers research methods providing a theoretical overview on metabolic alterations of cancer cells and a series of protocols that can be employed to study oncometabolism, in vitro, ex vivo and in vivo. Malignant cells exhibit metabolic changes when compared to their normal counterparts, owing to both genetic and epigenetic alterations. Although such a metabolic rewiring has recently been indicated as "yet another" general hallmark of cancer, accumulating evidence suggests that the metabolic alterations of each neoplasm rather represent a molecular signature that intimately accompanies, and hence cannot be severed from, all facets of malignant transformation.

Key Features

  • Continues the legacy of this premier serial with quality chapters authored by leaders in the field
  • Covers research methods in biomineralization science
  • Provides theoretical overview on metabolic alterations of cancer cells, and a series of protocols that can be employed to study oncometabolism, in vitro, ex vivo and in vivo

Readership

Biochemists, biophysicists, molecular biologists, analytical chemists, and physiologists.


Details

No. of pages:
536
Language:
English
Copyright:
© Academic Press 2014
Published:
27th May 2014
Imprint:
Academic Press
Hardcover ISBN:
9780124166189
eBook ISBN:
9780124166578

Ratings and Reviews


About the Serial Volume Editors

Lorenzo Galluzzi

Lorenzo Galluzzi

Lorenzo Galluzzi (born 1980) is currently Assistant Professor of Cell Biology in Radiation Oncology with the Department of Radiation Oncology of the Weill Cornell Medical College (New York, NY, USA), Honorary Assistant Professor Adjunct with the Department of Dermatology of the Yale School of Medicine (New Haven, CT, USA), Honorary Associate Professor with the Faculty of Medicine of the Paris Descartes University (Paris, France), and Faculty Member with the Graduate School of Biomedical Sciences and Biotechnology of the University of Ferrara (Ferrara, Italy) and the Graduate School of Pharmacological Sciences of the University of Padova (Padova, Italy). Prior to joining Weill Cornell Medical College (2017), Lorenzo Galluzzi was a Junior Scientist of the Research Team “Apoptosis, Cancer and Immunity” at the Cordeliers Research Center (Paris, France; 2012-2016). Lorenzo Galluzzi did his post-doctoral training at the Gustave Roussy Cancer Center (Villejuif, France; 2009-2011), after receiving his PhD from the Paris Sud University (Le Kremlin-Bicetre, France; 2008). He is also Associate Director of the European Academy for Tumor Immunology (EATI), Co-chair of the Society for Immunotherapy of Cancer (SITC) Immunogenic Cell Death Working Group, and Founding Member of the European Research Institute for Integrated Cellular Pathology (ERI-ICP). Lorenzo Galluzzi is best known for major experimental and conceptual contributions to the fields of cell death, autophagy, tumor metabolism and tumor immunology. In particular, he provided profound insights into the links between adaptive stress responses in cancer cells and the activation of a clinically relevant tumor-targeting immune response in the context of chemotherapy and radiation therapy. Lorenzo Galluzzi has published more than 400 scientific articles in international peer-reviewed journals. According to a survey published by Lab Times, he is currently the 6th and the youngest of the 30 most-cited European cell biologists (relative to the period 2007–2013), and he was nominated Highly Cited Researcher by Clarivate Analytics (formerly, Thomson Reuter) in 2016 and 2018. Lorenzo Galluzzi currently operates as Editor-in-Chief of three journals: OncoImmunology (which he co-founded in 2011), International Review of Cell and Molecular Biology, and Molecular and Cellular Oncology (which he co-founded in 2013). In addition, Lorenzo Galluzzi currently serves as Founding Editor for Microbial Cell and Cell Stress, and Associate Editor for Cell Death and Disease. Lorenzo Galluzzi (born 1980) is currently Assistant Professor of Cell Biology in Radiation Oncology with the Department of Radiation Oncology of the Weill Cornell Medical College (New York, NY, USA), Honorary Assistant Professor Adjunct with the Department of Dermatology of the Yale School of Medicine (New Haven, CT, USA), Honorary Associate Professor with the Faculty of Medicine of the Paris Descartes University (Paris, France), and Faculty Member with the Graduate School of Biomedical Sciences and Biotechnology of the University of Ferrara (Ferrara, Italy) and the Graduate School of Pharmacological Sciences of the University of Padova (Padova, Italy). Prior to joining Weill Cornell Medical College (2017), Lorenzo Galluzzi was a Junior Scientist of the Research Team “Apoptosis, Cancer and Immunity” at the Cordeliers Research Center (Paris, France; 2012-2016). Lorenzo Galluzzi did his post-doctoral training at the Gustave Roussy Cancer Center (Villejuif, France; 2009-2011), after receiving his PhD from the Paris Sud University (Le Kremlin-Bicetre, France; 2008). He is also Associate Director of the European Academy for Tumor Immunology (EATI), Co-chair of the Society for Immunotherapy of Cancer (SITC) Immunogenic Cell Death Working Group, and Founding Member of the European Research Institute for Integrated Cellular Pathology (ERI-ICP). Lorenzo Galluzzi is best known for major experimental and conceptual contributions to the fields of cell death, autophagy, tumor metabolism and tumor immunology. In particular, he provided profound insights into the links between adaptive stress responses in cancer cells and the activation of a clinically relevant tumor-targeting immune response in the context of chemotherapy and radiation therapy. Lorenzo Galluzzi has published more than 400 scientific articles in international peer-reviewed journals. According to a survey published by Lab Times, he is currently the 6th and the youngest of the 30 most-cited European cell biologists (relative to the period 2007–2013), and he was nominated Highly Cited Researcher by Clarivate Analytics (formerly, Thomson Reuter) in 2016 and 2018. Lorenzo Galluzzi currently operates as Editor-in-Chief of three journals: OncoImmunology (which he co-founded in 2011), International Review of Cell and Molecular Biology, and Molecular and Cellular Oncology (which he co-founded in 2013). In addition, Lorenzo Galluzzi currently serves as Founding Editor for Microbial Cell and Cell Stress, and Associate Editor for Cell Death and Disease.

Affiliations and Expertise

Assistant Professor of Cell Biology in Radiation Oncology, Department of Radiation Oncology, Weill Cornell Medical College, NY, USA

Guido Kroemer

Guido Kroemer

Guido Kroemer got his M.D. in 1985 from the University of Innsbruck, Austria, and his Ph.D. in molecular biology in 1992 from the Autonomous University of Madrid, Spain. He is currently Professor at the Faculty of Medicine of the University of Paris Descartes/Paris V, Director of the INSERM research team ‘Apoptosis, Cancer and Immunity’, Director of the Metabolomics and Cell Biology platforms of the Gustave Roussy Cancer Campus, and Practitioner at the Hôpital Européen George Pompidou (Paris, France). He is also the Director of the Paris Alliance of Cancer Research Institutes (PACRI) and the Labex 'Immuno-Oncology'. Dr. Kroemer is best known for the discoveries that mitochondrial membrane permeabilization constitutes a decisive step in regulated cell death; that autophagy is a cytoprotective mechanism with lifespan-extending effects; and that anticancer therapies are successful only if they stimulate tumour-targeting immune responses. He is currently the most-cited cell biologist in Europe (relative to the period 2007-2013), and he has received the Descartes Prize of the European Union, the Carus Medal of the Leopoldina, the Dautrebande Prize of the Belgian Royal Academy of Medicine, the Léopold Griffuel Prize of the French Association for Cancer Research, the Mitjavile prize of the French National Academy of Medicine and a European Research Council Advanced Investigator Award.

Affiliations and Expertise

INSERM Cordeliers Research Cancer Paris; Hopital Europeen Georges Pompidou; Universite Paris Descartes, France