Methods in Protein Design
This new volume of
Hardbound, 520 Pages
Published: March 2013
Imprint: Academic Press
ISBN: 978-0-12-394292-0
Contents
- Computational Design of Novel Protein Binders and Experimental Affinity Maturation
- Mining Tertiary Structural Motifs for Assessment of Designability
- Computational Methods for Controlling Binding Specificity
- Methods in Enzymology: "Flexible Backbone Sampling Methods to Model and Design Protein Alternative Conformations"
- OSPREY: Protein Design with Ensembles, Flexibility, and Provable Algorithms
- Scientific Benchmarks for Guiding Macromolecular Energy Function Improvement
- Molecular Dynamics Simulations for the Ranking, Evaluation, and Refinement of Computationally Designed Proteins
- Multi-State Protein Design Using CLEVER and CLASSY
- Using Analyses of Amino Acid Coevolution to Understand Protein Structure and Function
- Evolution Based Design of Proteins
- Protein Engineering and Stabilization from Sequence Statistics: Variation and Co-Variation Analysis
- Enzyme Engineering by Targeted Libraries
- Generation of High-Performance Binding Proteins for Peptide Motifs by Affinity Clamping
- Engineering Fibronectin-Based Binding Proteins by Yeast Surface Display
- Engineering and Analysis of Peptide-Recognition Domain Specificities by Phage Display and Deep Sequencing
- Efficient Sampling of SCHEMA Chimera Families to Identify Useful Sequence Elements
- Protein Switch Engineering by Domain Insertion
- Design of Chimeric Proteins by Combination of Subdomain-Sized Fragments
- a-Helix Mimicry with a/ß-Peptides
Timothy A Whitehead, David Baker, and Sarel J Fleishman Jian Zhang, Gevorg Grigoryan Oz Sharabi, Ariel Erijman, and Julia M. Shifman Noah Ollikainen, Colin A. Smith, James S. Fraser, Tanja Kortemme Pablo Gainza, Kyle E. Roberts, Ivelin Georgiev, Ryan H. Lilien, Daniel A. Keedy, Cheng-Yu Chen, Faisal Reza, Amy C. Anderson, David C. Richardson, Jane S. Richardson, and Bruce R. Donald Andrew Leaver-Fay, Matthew J. OMeara, Mike Tyka, Ron Jacak, Yifan Song, Elizabeth H. Kellogg, James Thompson, Ian W. Davis, Roland A. Pache, Sergey Lyskov, Jeffrey J. Gray, Tanja Kortemme, Jane S. Richardson, James J. Havranek, Jack Snoeyink, David Baker, Brian Kuhlman Gert Kiss, Vijay S. Pande and K. N. Houk Christopher Negron and Amy E. Keating Orr Ashenberg and Michael T. Laub Kimberly A. Reynolds, William P. Russ, Michael Socolich, and Rama Ranganathan Venuka Durani and Thomas J. Magliery Moshe Goldsmith and Dan S. Tawfik Shohei Koide and Jin Huang Tiffany F. Chen, Seymour de Picciotto, Benjamin J. Hackel, K. Dane Wittrup Megan E. McLaughlin, Sachdev S. Sidhu Pete Heinzelman, Philip A. Romero and Frances H. Arnold Manu Kanwar, R. Clay Wright, Amol Date, Jennifer Tullman, and Marc Ostermeier José Arcadio Farias Rico & Birte Höcker Lisa M. Johnson and Samuel H. Gellman
