Computer Methods, Part C book cover

Computer Methods, Part C

The combination of faster, more advanced computers and more quantitatively oriented biomedical researchers has recently yielded new and more precise methods for the analysis of biomedical data. These better analyses have enhanced the conclusions that can be drawn from biomedical data, and they have changed the way that experiments are designed and performed. This volume, along with the 2 previous Computer Methods volumes for the Methods in Enzymology serial, aims to inform biomedical researchers about recent applications of modern data analysis and simulation methods as applied to biomedical research.

Audience

Biochemists, molecular biologists, cell biologists, biomedical researchers, microbiologists, and developmental biologists

Included in series
Methods in Enzymology

Hardbound, 696 Pages

Published: January 2011

Imprint: Academic Press

ISBN: 978-0-12-381270-4

Contents

    1. Predicting Fluorescence Lifetimes and Spectra of Biopolymers
    2. Patrik R. Callis

    3. Modeling of Regulatory Networks: Theory and Applications in the study of the Drosophila Circadian Clock
    4. Elizabeth Y. Scribner, Hassan M. Fathallah-Shaykh

    5. Strategies for articulated multibody-based adaptive coarse grain simulation of RNA
    6. Mohammad Poursina, Kishor D. Bhalerao, Samuel C. Flores , Kurt S. Anderson, Alain Laederach

    7. Modeling Loop Entropy
    8. Gregory S. Chirikjian

    9. Inferring Functional Relationships and Causal Network Structure from Gene Expression Profiles
    10. Radhakrishnan Nagarajan

    11. Numerical solution of the chemical master equation: uniqueness and stability of the stationary distribution for chemical networks, and mRNA bursting in a gene network with negative feedback regulation
    12. E. S. Zeron, M. Santill_an

    13. How molecular should your molecular model be? On the level of molecular detail required to simulate biological networks in systems and synthetic biology
    14. Didier Gonze, Wassim Abou-Jaoud´e, Adama Ouattara, and Jos´e Halloy

    15. Computational modelling of biological pathways by executable biology
    16. Maria Luisa Guerriero John K. Heath

    17. Computing Molecular Fluctuations in Biochemical Reaction Systems Based on A Mechanistic, Statisitical Theory of Irreversible Processes
    18. Don Kulasiri

    19. Probing the input-output behaviour of biochemical and genetic systems: system identification methods from control theory
    20. David McMillen, Brian Ingalls, Jordan Ang

    21. Biochemical pathway modelling tools for drug target detection in cancer and other complex diseases
    22. Alberto Marin-Sanguino, Shailendra K. Gupta, Eberhard O. Voit and Julio Vera

    23. Deterministic and Stochastic Simulation and Analysis of Biochemical Reaction Networks: The Lactose Operon Example
    24. Necmettin Yildirim, Caner Kazanci F

    25. Multivariate Neighborhood Sample Entropy: A method for data reduction and prediction of complex data.
    26. Joshua S. Richman MD, PhD

    27. Scaling differences of heartbeat excursions between wake and sleep periods
    28. L. Guzm´an-Vargas, I. Reyes-Ram´ırez, R. Hern´andez-P´erez, F. Angulo-Brown

    29. Changepoint analysis for single-molecule polarized totalinternal reflection fluorescence microscopy experiments
    30. John F. Beausang, Yale E. Goldman, and Philip C. Nelson

    31. Inferring mechanisms from dose-response curves
    32. Carson C. Chow, Karen M. Ong, Edward J. Dougherty, and S. Stoney Simons, Jr.

    33. Spatial Aspects in Biological System Simulations
    34. Haluk Resat, Michelle N. Costa, and Harish Shankaran

    35. Computational Approaches to Modeling Viral Structure and Assembly
    36. Stephen C. Harvey, Anton S. Petrov, Batsal Devkota and Mustafa Burak Boz

    37. An Object-Oriented Software Suite for the Simulation and Design of Macromolecules
    38. Andrew Leaver-Fay, Michael Tyka, Steven M. Lewis, Oliver F. Lange, James Thompson, Ron Jacak, Kristian Kaufman, P. Douglas Renfrew, Colin A. Smith, Will Sheffler, Ian W. Davis, Seth Cooper, Adrien Treuille, Daniel J. Mandell, Florian Richter, Yih-En Andrew Ban, Sarel J. Fleishman, Jacob E. Corn, David E. Kim, Sergey Lyskov, Monica Berrondo, Stuart Mentzer, Zoran Popović, James J. Havranek, John Karanicolas, Rhiju Das, Jens Meiler, Tanja Kortemme, Jeffrey J. Gray, Brian Kuhlman1, David Baker, and Philip Bradley

    39. Computational Design of Intermolecular Stability and Specificity in Protein Self-Assembly

    Vikas Nanda, Sohail Zahid, Fei Xu, Daniel Levine

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