Computational Methods in Cell Biology
Computational methods are playing an ever increasing role in cell biology. This volume of Methods in Cell Biology focuses on Computational Methods in Cell Biology and consists of two parts: (1) data extraction and analysis to distill models and mechanisms, and (2) developing and simulating models to make predictions and testable hypotheses.
Included in series
Methods in Cell Biology
Methods in Cell Biology
Hardbound, 370 Pages
Published: April 2012
Imprint: Academic Press
ISBN: 978-0-12-388403-9
Contents
- Principles of model building: an experimentation-aided approach to development of models for signaling networks Ambhighainath Ganesan and Andre Levchenko
- Integrated Inference and Analysis of Regulatory Networks From Multi-Level Measurements Christopher S. Poultney, Alex Greenfield, and Richard Bonneau
- Swimming upstream: identifying proteomic signals that drive transcriptional changes using the interactome and multiple "-omics" datasets Shao-shan Carol Huang and Ernest Fraenkel
- A framework for modeling the relationship between cellular steady-state and stimulus-responsiveness Paul Loriaux and Alexander Hoffmann
- Stochastic Modeling of Cellular Networks Jacob Stewart-Ornstein and Hana El-Samad
- Quantifying Traction Stresses in Adherent Cells Casey M. Kraning-Rush, Shawn P. Carey, Joseph P. Califano, and Cynthia A. Reinhart-King
- CellOrganizer: Image-derived Models of Subcellular Organization and Protein Distribution Robert F. Murphy
- Spatial Modeling of Cell Signaling Networks Ann E. Cowan, Ion I. Moraru, James C. Schaff, Boris M. Slepchenko, and Leslie M. Loew
- Stochastic models of cell protrusion arising from spatiotemporal signaling and adhesion dynamics Erik S. Welf and Jason M. Haugh
- Nonparametric Variable Selection and Modeling for Spatial and Temporal Regulatory Networks Anil Aswani, Mark D. Biggin, Peter Bickel and Claire Tomlin
- Quantitative Models of the Mechanisms that Control Genome-Wide Patterns of Animal Transcription Factor Binding Tommy Kaplan and Mark D. Biggin
- Computational Analysis of Live Cell Images of the Arabidopsis thaliana Plant Alexandre Cunha, Paul T. Tarr, Adrienne H. K. Roeder, Alphan Altinok, Eric Mjolsness, and Elliot M. Meyerowitz
- Multi-scale modeling of tissues using CompuCell3D Maciej H. Swat, Gilberto L. Thomas, Julio M. Belmonte, Abbas Shirinifard, Mitja Hmeljak, and James A. Glazier
- Multiscale Model of Fibrin Accumulation on the Blood Clot Surface and Platelet Dynamics
